Index

A

analyze() (ollin.core.movement.MovementData method) (ollin.movement_analyzers.base.MovementAnalyzer method) (ollin.movement_analyzers.bearing.Analyzer method) (ollin.movement_analyzers.turn_angle.Analyzer method) (ollin.movement_analyzers.velocity.Analyzer method)

Analyzer (class in ollin.movement_analyzers.bearing) (class in ollin.movement_analyzers.turn_angle) (class in ollin.movement_analyzers.velocity)

B

BASE_CONFIG (in module ollin.calibration.config)

BaseSite (class in ollin.core.sites)

C

calculate_hr_info() (ollin.calibration.home_range.HomeRangeCalibrator method) calculate_oc_info() (ollin.calibration.occupancy.OccupancyCalibrator method) calculate_velocity_info() (ollin.calibration.velocity.VelocityCalibrator method) calibrate() (in module ollin.calibration.calibrate) camera_config (ollin.core.detection.Detection attribute) (ollin.core.detection.MovementDetection attribute) CameraConfiguration (class in ollin.core.detection)

cell_occupancy (ollin.core.occupancy.Occupancy attribute) compile_and_save() (ollin.estimation.stanmodels.StanModel method) COMPILED_PATH (in module ollin.estimation.stanmodels) cone_angle (ollin.core.detection.CameraConfiguration attribute) cone_range (ollin.core.detection.CameraConfiguration attribute) config (ollin.calibration.home_range.HomeRangeCalibrator attribute) (ollin.calibration.occupancy.OccupancyCalibrator attribute) (ollin.calibration.velocity.VelocityCalibrator attribute)

D

data (ollin.estimation.estimation.Estimate attribute) (ollin.estimation.occupancy.base.OccupancyEstimate attribute) default_parameters (ollin.movement_models.base.MovementModel attribute) density_to_occupancy() (in module ollin.core.utils) detect() (ollin.core.detection.CameraConfiguration method) detectability (ollin.estimation.occupancy.base.OccupancyEstimate attribute)

Detection (class in ollin.core.detection) detection_nums (ollin.core.detection.Detection attribute) (ollin.core.detection.MovementDetection attribute) detections (ollin.core.detection.Detection attribute) (ollin.core.detection.MovementDetection attribute) directions (ollin.core.detection.CameraConfiguration attribute)

E

Estimate (class in ollin.estimation.estimation) estimate() (ollin.estimation.estimation.EstimationModel method) (ollin.estimation.occupancy.naive.Model method) (ollin.estimation.occupancy.single_species.Model method) (ollin.estimation.occupancy.voronoi_areas.Model method) (ollin.estimation.stanmodels.StanModel method)

estimate_occupancy() (ollin.core.detection.Detection method) EstimationModel (class in ollin.estimation.estimation) extend() (ollin.core.movement.Movement method)

F

fit() (ollin.calibration.home_range.HomeRangeCalibrator method) (ollin.calibration.occupancy.OccupancyCalibrator method) (ollin.calibration.velocity.VelocityCalibrator method)

G

generate_movement() (ollin.movement_models.base.MovementModel method) (ollin.movement_models.constant_brownian.Model method) (ollin.movement_models.constant_levy.Model method) (ollin.movement_models.gradient_brownian.Model method) (ollin.movement_models.gradient_levy.Model method) (ollin.movement_models.variable_brownian.Model method) (ollin.movement_models.variable_levy.Model method) get_estimation_model() (in module ollin.estimation) get_estimation_model_list() (in module ollin.estimation)

get_movement_analyzer_list() (in module ollin.movement_analyzers) get_movement_model_list() (in module ollin.movement_models) get_niche_resolution() (ollin.core.sites.BaseSite static method) get_niche_size() (ollin.core.sites.BaseSite static method) get_true_niche() (ollin.core.sites.BaseSite static method) GLOBAL_CONSTANTS (in module ollin.core.constants) grid (ollin.core.detection.MovementDetection attribute) (ollin.core.home_range.HomeRange attribute) (ollin.core.occupancy.Occupancy attribute)

H

handle_parameters() (ollin.movement_models.base.MovementModel method) home_range (ollin.core.movement.Movement attribute) (ollin.core.movement.MovementData attribute) home_range_info (ollin.calibration.home_range.HomeRangeCalibrator attribute)

home_range_resolution() (in module ollin.core.utils) home_range_to_velocity() (in module ollin.core.utils) home_ranges (ollin.core.home_range.HomeRange attribute) HomeRange (class in ollin.core.home_range) HomeRangeCalibrator (class in ollin.calibration.home_range)

K

kde (ollin.core.sites.Site attribute)

kde_bandwidth (ollin.core.sites.Site attribute)

L

load_model() (ollin.estimation.stanmodels.StanModel method)

logit() (in module ollin.core.utils)

M

make_grid() (in module ollin.core.home_range) (ollin.core.detection.CameraConfiguration class method) make_niche() (ollin.core.sites.Site static method) make_niche_from_kde() (ollin.core.sites.Site static method) make_random() (ollin.core.detection.CameraConfiguration class method) (ollin.core.sites.Site class method) mean_home_range (ollin.core.home_range.HomeRange attribute) Model (class in ollin.estimation.occupancy.naive) (class in ollin.estimation.occupancy.single_species) (class in ollin.estimation.occupancy.voronoi_areas) (class in ollin.movement_models.constant_brownian) (class in ollin.movement_models.constant_levy) (class in ollin.movement_models.gradient_brownian) (class in ollin.movement_models.gradient_levy) (class in ollin.movement_models.variable_brownian) (class in ollin.movement_models.variable_levy) model (ollin.estimation.estimation.Estimate attribute) (ollin.estimation.occupancy.base.OccupancyEstimate attribute)

Movement (class in ollin.core.movement) movement (ollin.core.detection.MovementDetection attribute) (ollin.core.home_range.HomeRange attribute) (ollin.core.occupancy.Occupancy attribute) (ollin.movement_analyzers.base.MovementAnalyzer attribute) movement_data (ollin.core.movement.Movement attribute) (ollin.core.movement.MovementData attribute) movement_model (ollin.calibration.home_range.HomeRangeCalibrator attribute) (ollin.calibration.occupancy.OccupancyCalibrator attribute) (ollin.calibration.velocity.VelocityCalibrator attribute) (ollin.core.movement.Movement attribute) MOVEMENT_PARAMETERS (in module ollin.core.constants) MovementAnalyzer (class in ollin.movement_analyzers.base) MovementData (class in ollin.core.movement) MovementDetection (class in ollin.core.detection) MovementModel (class in ollin.movement_models.base)

N

name (ollin.estimation.estimation.EstimationModel attribute) (ollin.estimation.stanmodels.StanModel attribute) (ollin.movement_analyzers.base.MovementAnalyzer attribute) (ollin.movement_models.base.MovementModel attribute) niche (ollin.core.sites.BaseSite attribute) (ollin.core.sites.Site attribute)

niche_size (ollin.core.sites.BaseSite attribute) (ollin.core.sites.Site attribute) num_cams (ollin.core.detection.CameraConfiguration attribute) num_slice() (ollin.core.movement.MovementData method)

O

Occupancy (class in ollin.core.occupancy) occupancy (ollin.core.occupancy.Occupancy attribute) (ollin.estimation.occupancy.base.OccupancyEstimate attribute) occupancy_info (ollin.calibration.occupancy.OccupancyCalibrator attribute) occupancy_resolution() (in module ollin.core.utils) occupancy_to_density() (in module ollin.core.utils) OccupancyCalibrator (class in ollin.calibration.occupancy) OccupancyEstimate (class in ollin.estimation.occupancy.base) ollin.calibration.calibrate (module) ollin.calibration.config (module) ollin.calibration.home_range (module) ollin.calibration.occupancy (module) ollin.calibration.velocity (module) ollin.core.constants (module) ollin.core.detection (module) ollin.core.home_range (module) ollin.core.movement (module) ollin.core.occupancy (module) ollin.core.sites (module) ollin.core.utils (module)

ollin.estimation (module) ollin.estimation.estimation (module) ollin.estimation.occupancy.base (module) ollin.estimation.occupancy.naive (module) ollin.estimation.occupancy.single_species (module) ollin.estimation.occupancy.voronoi_areas (module) ollin.estimation.stanmodels (module) ollin.movement_analyzers (module) ollin.movement_analyzers.base (module) ollin.movement_analyzers.bearing (module) ollin.movement_analyzers.turn_angle (module) ollin.movement_analyzers.velocity (module) ollin.movement_models (module) ollin.movement_models.base (module) ollin.movement_models.constant_brownian (module) ollin.movement_models.constant_levy (module) ollin.movement_models.gradient_brownian (module) ollin.movement_models.gradient_levy (module) ollin.movement_models.variable_brownian (module) ollin.movement_models.variable_levy (module)

P

plot() (ollin.calibration.home_range.HomeRangeCalibrator method) (ollin.calibration.occupancy.OccupancyCalibrator method) (ollin.calibration.velocity.VelocityCalibrator method) (ollin.core.detection.CameraConfiguration method) (ollin.core.detection.Detection method) (ollin.core.detection.MovementDetection method) (ollin.core.home_range.HomeRange method) (ollin.core.movement.MovementData method) (ollin.core.occupancy.Occupancy method) (ollin.core.sites.BaseSite method) (ollin.core.sites.Site method) (ollin.movement_analyzers.base.MovementAnalyzer method) (ollin.movement_analyzers.bearing.Analyzer method) (ollin.movement_analyzers.turn_angle.Analyzer method) (ollin.movement_analyzers.velocity.Analyzer method)

plot_occupancy_timeseries() (ollin.core.occupancy.Occupancy method) points (ollin.core.sites.Site attribute) positions (ollin.core.detection.CameraConfiguration attribute) prepare_data() (ollin.estimation.occupancy.single_species.Model method) (ollin.estimation.stanmodels.StanModel method)

R

range (ollin.core.detection.CameraConfiguration attribute) (ollin.core.detection.Detection attribute) (ollin.core.detection.MovementDetection attribute) (ollin.core.sites.BaseSite attribute) (ollin.core.sites.Site attribute)

resolution (ollin.core.home_range.HomeRange attribute) (ollin.core.occupancy.Occupancy attribute) (ollin.core.sites.BaseSite attribute) (ollin.core.sites.Site attribute) results (ollin.movement_analyzers.base.MovementAnalyzer attribute)

S

sample() (ollin.core.movement.MovementData method) (ollin.core.sites.BaseSite method) (ollin.core.sites.Site method) select() (ollin.core.movement.MovementData method) sigmoid() (in module ollin.core.utils) simulate() (ollin.core.movement.Movement class method) Site (class in ollin.core.sites)

site (ollin.core.detection.CameraConfiguration attribute) (ollin.core.movement.Movement attribute) (ollin.core.movement.MovementData attribute) stancode (ollin.estimation.stanmodels.StanModel attribute) StanModel (class in ollin.estimation.stanmodels) stanmodel (ollin.estimation.stanmodels.StanModel attribute) STARTING_PARAMETERS (in module ollin.calibration.config) steps (ollin.core.occupancy.Occupancy attribute)

T

time_slice() (ollin.core.movement.MovementData method)

times (ollin.core.movement.Movement attribute) (ollin.core.movement.MovementData attribute)

V

velocity (ollin.core.movement.Movement attribute) velocity_info (ollin.calibration.velocity.VelocityCalibrator attribute)

velocity_modification() (in module ollin.core.utils) velocity_to_home_range() (in module ollin.core.utils) VelocityCalibrator (class in ollin.calibration.velocity)